Uppsala University : Dept. Cell and Molecular Biology : Molecular Biophysics
Uppsala universitet
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About Me
Contact Details
Publications

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Michiel's Thesis Defense
Compute cluster
Conferment Banquet
Bianca's Thesis Defense
Tomas's Thesis Defense
Tomas's Thesis Nailing
LCLS Beamtime 2012
Erik's Dissertation Party
Erik's Thesis Nailing
CSB BBQ
Filipe's Thesis Defense
Marvin's Thesis Defense
Graphene preparation
SPB Workshop 2008

External links
Gromacs
Private Photoblog

Daniel Larsson

About Me

In July 2012 I joined the Laboratory of Molecular Biophysics at the department of Cell and Molecular Biology and I am currently studying the smallest biological structures by computational and experimental means.

Contact Details

Mailing Address
Biomedical Center
Box 596
SE-751 24 Uppsala
Sweden
Visiting Address
Biomedical Center
Husargatan 3
752 37 Uppsala
Sweden

My office B9:210b can be found on the 2:nd floor in corridor B9. It is most easily reached by using entrance A10.

Finding at BMC: BMC page, Map of BMC
Finding to BMC (external mapping services): Google Maps, Hitta.se, Eniro.se
Phone
Office phone: +46 18 471 6691
Cell phone: +46 70 498 5470
E-Mail
daniel . larsson A icm . uu . se
larsson A xray . bmc . uu . se
N.B. Replace 'A' with '@' and remove spaces before use.

Publications

List of publications in peer-reviewed journals in reverse chronological order. Shared first authorship indicated with an asterisk (*).

  1. Okamoto K, ... Larsson DSD, et al. (submitted)
  2. Reddy HKN, Yoon CH, ... Larsson DSD, et al. (2017) Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac Coherent Light Source. Sci. Data (accepted)
  3. Daurer B, Okamoto K, et al. & Larsson DSD (2017) Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. IUCrJ 4:251-262
  4. Okamoto K, Miyazaki N, Larsson DSD, et al. (2016) The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes. Sci. Rep. 6:33170
  5. Munke A, ..., Larsson DSD, et al. (2016) Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source. Sci. Data 3:160064
  6. Schot Gvd, ..., Larsson DSD, et al. (2016) Open data set of live cyanobacterial cells imaged using an X-ray laser. Sci. Data 3:160058
  7. Hantke MF, Hasse D, ..., Larsson DSD, et al. (2016) A data set from flash X-ray imaging of carboxysomes. Sci. Data 3:160061
  8. Schot Gvd, Svenda M, ..., Larsson DSD, et al. (2015) Imaging Single Cells in a Beam of Live Cyanobacteria with an X-ray Laser. Nat. Commun. 6:5704
  9. Hantke MF, Hasse D, ..., Larsson DSD, et al. (2014) High-throughput imaging of heterogeneous cell organelles with an X-ray laser. Nature Photonics 8(12):943-949
  10. Larsson DSD, van der Spoel D (2012) Screening for the Location of RNA using the Chloride Ion Distribution in Simulations of Virus Capsids. J Chem Theory Comput 8(7):2474-2483
  11. Larsson DSD, Liljas L, van der Spoel D (2012) Virus Capsid Dissolution Studied by Microsecond Molecular Dynamics Simulations. PLoS Comput Biol 8(5):e1002502
  12. Wang F, Weckert E, Ziaja B, Larsson DSD, van der Spoel D (2011) Coherent diffraction of a single virus particle: The impact of a water layer on the available orientational information. Phys Rev E 83(3):031907
  13. Spångberg D, Larsson DSD, van der Spoel D (2011) Trajectory NG - Portable, Compressed, General Molecular Dynamics Trajectories. J Mol Model 17(10):2669-2685
  14. van der Spoel D, Marklund E, Larsson DSD, Caleman C (2011) Proteins, Lipids, and Water in the Gas Phase. Macromol Biosci 11(1):50-59
  15. Friemann R, Larsson DSD, Wang Y, van der Spoel D (2009) Molecular dynamics simulations of a membrane protein-micelle complex in vacuo. J Am Chem Soc 131(46):16606-7
  16. Marklund EG, Larsson DSD, van der Spoel D, Patriksson A, Caleman C (2009) Structural stability of electrosprayed proteins: temperature and hydration effects. Phys Chem Chem Phys 11(36):8069-78
  17. Wang* Y, Larsson* DSD, van der Spoel D (2009) Encapsulation of myoglobin in a cetyl trimethylammonium bromide micelle in vacuo: a simulation study. Biochemistry 48(5):1006-15
  18. Brindefalk B, Viklund J, Larsson D, Thollesson M, Andersson SGE (2007) Origin and evolution of the mitochondrial aminoacyl-tRNA synthetases. Mol Biol Evol 24(3):743-56

Profile at Google Scholar.

PhD thesis

On May 25, 2012 I successfully defended the thesis "Exploring the Molecular Dynamics of Proteins and Viruses" (DIVA, .pdf 68 MB).